I found holdem manager to look, feel and work much better than pokertracker.
I do have a small problem though. It seems to interpret BB as SB. So 5/10 on svs, converted with HHC, imported to HEM, would display as 5/5. Hence bb/100 will display wrong aswel, although not so hard just to divide by 2, or 4 if you want to compare to PTBB/100